In this page, the statistics of the cDNA libraries and sequences contained in PRIGEN are described. Chimpanzee 5'-ESTs were annotated by comparing to human RefSeq transcripts.
Table 1. Chimpanzee cDNA libraries and sequences.
|Individuals||Organs or tissues||cDNA libraries||No. of 5'-ESTs|
|Female, 11 yrs. old *||Brain||Cerebellum cortex||PccA, PccB||2,503||10,405|
|Cerebrum cortex, frontal lobe (right)||PflB, PflC||6,345|
|Cerebrum cortex, occipital lobe (right)||PorA, PorB||1,557|
|Male, 19 yrs. old **||Skin, epidermal tissue||PstA||3,513|
Figure 1. Annotation of Chimpanzee 5'-ESTs by comparing to human RefSeq transcripts.
a. Classification by BLAST search (E = 1e-120). 10,180 5'-ESTs were homologous to human RefSeq transcripts (NM and NR) ***.
b. Numbers of annotated 5'-ESTs (RefSeq homologs). The total number of RefSeq transcripts was 5,341, including redundancy. In total 3,942 unique RefSeq transcripts were obtained.