Library data

In this page, the statistics of the cDNA libraries and sequences contained in PRIGEN are described. Chimpanzee 5'-ESTs were annotated by comparing to human RefSeq transcripts.


Table 1. Chimpanzee cDNA libraries and sequences.

Individuals Organs or tissues cDNA libraries All 5'-ESTs Sakate et al. (2003) Sakate et al. (2007) ***
Female, 11 yrs. old * Brain Cerebellum cortex PccA, PccB 2,503 10,405 415 1,043 19 49
Cerebrum cortex, frontal lobe (right) PflB, PflC 6,345 0 5
Cerebrum cortex, occipital lobe (right) PorA, PorB 1,557 628 25
Liver PlvA 86 47 0
Male, 19 yrs. old ** Skin, epidermal tissue PstA 3,513 857 41
Total 14,004 1,947 90
* Tissue was obtained by autopsy from individuals that died of illness.
** About 10 g of skin tissue was obtained by biopsy.
*** Full-length sequenced. See References and Download on top page.

fig1

Figure 1. Annotation of Chimpanzee 5'-ESTs by comparing to human RefSeq transcripts.
a. Classification by BLAST search (E = 1e-120). 10,180 5'-ESTs were homologous to human RefSeq transcripts (NM and NR) ****.
b. Numbers of annotated 5'-ESTs (RefSeq homologs). The total number of RefSeq transcripts was 5,341, including redundancy. In total 3,942 unique RefSeq transcripts were obtained.

**** Release 23 (May 8, 2007). Sequences with acccession prefixes of NM (curated mRNA) or NR (curated ncRNA) were used.