In this page, the statistics of the cDNA libraries and sequences contained in PRIGEN are described. Chimpanzee 5'-ESTs were annotated by comparing to human RefSeq transcripts.
Table 1. Chimpanzee cDNA libraries and sequences.
|Individuals||Organs or tissues||cDNA libraries||All 5'-ESTs||Sakate et al. (2003)||Sakate et al. (2007) ***|
|Female, 11 yrs. old *||Brain||Cerebellum cortex||PccA, PccB||2,503||10,405||415||1,043||19||49|
|Cerebrum cortex, frontal lobe (right)||PflB, PflC||6,345||0||5|
|Cerebrum cortex, occipital lobe (right)||PorA, PorB||1,557||628||25|
|Male, 19 yrs. old **||Skin, epidermal tissue||PstA||3,513||857||41|
Figure 1. Annotation of Chimpanzee 5'-ESTs by comparing to human RefSeq transcripts.
a. Classification by BLAST search (E = 1e-120). 10,180 5'-ESTs were homologous to human RefSeq transcripts (NM and NR) ****.
b. Numbers of annotated 5'-ESTs (RefSeq homologs). The total number of RefSeq transcripts was 5,341, including redundancy. In total 3,942 unique RefSeq transcripts were obtained.